.. _funcDBs:

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Session 7: Functional databases
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This seventh session lists sources for annotations of functions in assembled metagenoms:

* Curated families/ontologies

   * Pfam
   * KEGG
   * EggNOG

* Large collections
   * UniProt
   * NCBI 

* Specialized databases
   * antibiotics resistance: Resfams, CARD, …
   * specific metabolism: antiSMASH, CAZy, …
   * taxonomic/phylogenetic markers: BUSCO, CheckM, mOTUs, …
   * others: virulence, effectors, toxins, plasmids, phages, CRISPR…

The recording is available on the University of Amsterdam's `media site <https://video.uva.nl/media/Metagenomics+101+-+7%7C+Functional+databases+-+public+version/0_zv476g5m>`_. You can find the slides here: :download:`slides session 7 <_static/220419_FuncDBs.pdf>`.