Exact inference algorithm using brute force enumeration (mainly useful for testing purposes) More...

#include <dai/exactinf.h>

Inheritance diagram for dai::ExactInf:

Classes
struct	Properties
	Parameters for ExactInf. More...

Public Member Functions
Constructors/destructors
	ExactInf ()
	Default constructor. More...

	ExactInf (const FactorGraph &fg, const PropertySet &opts)
	Construct from FactorGraph fg and PropertySet opts. More...

General InfAlg interface
virtual ExactInf *	clone () const
	Returns a pointer to a new, cloned copy of `*this` (i.e., virtual copy constructor) More...

virtual ExactInf *	construct (const FactorGraph &fg, const PropertySet &opts) const
	Returns a pointer to a newly constructed inference algorithm. More...

virtual std::string	name () const
	Returns the name of the algorithm. More...

virtual Factor	belief (const Var &v) const
	Returns the (approximate) marginal probability distribution of a variable. More...

virtual Factor	belief (const VarSet &vs) const
	Returns the (approximate) marginal probability distribution of a set of variables. More...

virtual Factor	beliefV (size_t i) const
	Returns the (approximate) marginal probability distribution of the variable with index i. More...

virtual Factor	beliefF (size_t I) const
	Returns the (approximate) marginal probability distribution of the variables on which factor I depends. More...

virtual std::vector< Factor >	beliefs () const
	Returns all beliefs (approximate marginal probability distributions) calculated by the algorithm. More...

virtual Real	logZ () const
	Returns the logarithm of the (approximated) partition sum (normalizing constant of the factor graph). More...

std::vector< size_t >	findMaximum () const

virtual void	init ()
	Initializes all data structures of the approximate inference algorithm. More...

virtual void	init (const VarSet &)
	Initializes all data structures corresponding to some set of variables. More...

virtual Real	run ()
	Runs the approximate inference algorithm. More...

virtual Real	maxDiff () const
	Returns maximum difference between single variable beliefs in the last iteration. More...

virtual size_t	Iterations () const
	Returns number of iterations done (one iteration passes over the complete factorgraph). More...

virtual void	setProperties (const PropertySet &opts)
	Set parameters of this inference algorithm. More...

virtual PropertySet	getProperties () const
	Returns parameters of this inference algorithm converted into a PropertySet. More...

virtual std::string	printProperties () const
	Returns parameters of this inference algorithm formatted as a string in the format "[key1=val1,key2=val2,...,keyn=valn]". More...

Additional interface specific for ExactInf
Factor	calcMarginal (const VarSet &vs) const
	Calculates marginal probability distribution for variables vs. More...

Public Member Functions inherited from dai::DAIAlg< GRM >
	DAIAlg ()
	Default constructor. More...

	DAIAlg (const GRM &grm)
	Construct from GRM. More...

FactorGraph &	fg ()
	Returns reference to underlying FactorGraph. More...

const FactorGraph &	fg () const
	Returns constant reference to underlying FactorGraph. More...

void	clamp (size_t i, size_t x, bool backup=false)
	Clamp variable with index i to value x (i.e. multiply with a Kronecker delta $\delta_{x_i, x}$ ) More...

void	makeCavity (size_t i, bool backup=false)
	Sets all factors interacting with variable with index i to one. More...

void	makeRegionCavity (std::vector< size_t > facInds, bool backup)
	Sets all factors indicated by facInds to one. More...

void	backupFactor (size_t I)
	Make a backup copy of factor I. More...

void	backupFactors (const VarSet &vs)
	Make backup copies of all factors involving the variables in vs. More...

void	restoreFactor (size_t I)
	Restore factor I from its backup copy. More...

void	restoreFactors (const VarSet &vs)
	Restore the factors involving the variables in vs from their backup copies. More...

void	restoreFactors ()
	Restore all factors from their backup copies. More...

Public Member Functions inherited from dai::InfAlg
virtual	~InfAlg ()
	Virtual destructor (needed because this class contains virtual functions) More...

virtual std::string	identify () const
	Identifies itself for logging purposes. More...

virtual void	setMaxIter (size_t)
	Sets maximum number of iterations (one iteration passes over the complete factorgraph). More...

Public Attributes
struct dai::ExactInf::Properties	props

Private Member Functions
void	construct ()
	Helper function for constructors. More...

Private Attributes
std::vector< Factor >	_beliefsV
	All single variable marginals. More...

std::vector< Factor >	_beliefsF
	All factor variable marginals. More...

Real	_logZ
	Logarithm of partition sum. More...

Detailed Description

Exact inference algorithm using brute force enumeration (mainly useful for testing purposes)

Inference is done simply by multiplying all factors together into one large factor, and then calculating marginals and partition sum from the product.

Note: This inference method can easily exhaust all available memory; in that case, one may try the JTree class instead.

Constructor & Destructor Documentation

dai::ExactInf::ExactInf ( )

inline

Default constructor.

dai::ExactInf::ExactInf	(	const FactorGraph &	fg,
		const PropertySet &	opts
	)

inline

Construct from FactorGraph fg and PropertySet opts.

Parameters

fg	Factor graph.
opts	Parameters

See also: Properties

Member Function Documentation

virtual ExactInf* dai::ExactInf::clone ( ) const

inlinevirtual

Returns a pointer to a new, cloned copy of *this (i.e., virtual copy constructor)

Implements dai::InfAlg.

virtual ExactInf* dai::ExactInf::construct	(	const FactorGraph &	fg,
		const PropertySet &	opts
	)		const

inlinevirtual

Returns a pointer to a newly constructed inference algorithm.

Parameters

fg	Factor graph on which to perform the inference algorithm;
opts	Parameters passed to constructor of inference algorithm;

Implements dai::InfAlg.

virtual std::string dai::ExactInf::name ( ) const

inlinevirtual

Returns the name of the algorithm.

Implements dai::InfAlg.

virtual Factor dai::ExactInf::belief ( const Var & v ) const

inlinevirtual

Returns the (approximate) marginal probability distribution of a variable.

Note: Before this method is called, run() should have been called.

Reimplemented from dai::InfAlg.

Factor dai::ExactInf::belief ( const VarSet & vs ) const

virtual

Returns the (approximate) marginal probability distribution of a set of variables.

Note: Before this method is called, run() should have been called.

Exceptions

NOT_IMPLEMENTED	if not implemented/supported.
BELIEF_NOT_AVAILABLE	if the requested belief cannot be calculated with this algorithm.

Implements dai::InfAlg.

virtual Factor dai::ExactInf::beliefV ( size_t i ) const

inlinevirtual

Returns the (approximate) marginal probability distribution of the variable with index i.

For some approximate inference algorithms, using beliefV() is preferred to belief() for performance reasons.

Note: Before this method is called, run() should have been called.

Reimplemented from dai::InfAlg.

virtual Factor dai::ExactInf::beliefF ( size_t I ) const

inlinevirtual

Returns the (approximate) marginal probability distribution of the variables on which factor I depends.

For some approximate inference algorithms, using beliefF() is preferred to belief() for performance reasons.

Note: Before this method is called, run() should have been called.

Reimplemented from dai::InfAlg.

vector< Factor > dai::ExactInf::beliefs ( ) const

virtual

Returns all beliefs (approximate marginal probability distributions) calculated by the algorithm.

Note: Before this method is called, run() should have been called.

Implements dai::InfAlg.

virtual Real dai::ExactInf::logZ ( ) const

inlinevirtual

Returns the logarithm of the (approximated) partition sum (normalizing constant of the factor graph).

Note: Before this method is called, run() should have been called.

Exceptions

NOT_IMPLEMENTED if not implemented/supported

Implements dai::InfAlg.

std::vector< size_t > dai::ExactInf::findMaximum ( ) const

virtual

Note: The complexity of this calculation is exponential in the number of variables.

Reimplemented from dai::InfAlg.

void dai::ExactInf::init ( )

virtual

Initializes all data structures of the approximate inference algorithm.

Note: This method should be called at least once before run() is called.

Implements dai::InfAlg.

virtual void dai::ExactInf::init ( const VarSet & vs )

inlinevirtual

Initializes all data structures corresponding to some set of variables.

This method can be used to do a partial initialization after a part of the factor graph has changed. Instead of initializing all data structures, it only initializes those involving the variables in vs.

Exceptions

NOT_IMPLEMENTED if not implemented/supported

Implements dai::InfAlg.

Real dai::ExactInf::run ( )

virtual

Runs the approximate inference algorithm.

Note: Before run() is called the first time, init() should have been called.

Implements dai::InfAlg.

virtual Real dai::ExactInf::maxDiff ( ) const

inlinevirtual

Returns maximum difference between single variable beliefs in the last iteration.

Exceptions

NOT_IMPLEMENTED if not implemented/supported

Reimplemented from dai::InfAlg.

virtual size_t dai::ExactInf::Iterations ( ) const

inlinevirtual

Returns number of iterations done (one iteration passes over the complete factorgraph).

Exceptions

NOT_IMPLEMENTED if not implemented/supported

Reimplemented from dai::InfAlg.

void dai::ExactInf::setProperties ( const PropertySet & opts )

virtual

Set parameters of this inference algorithm.

The parameters are set according to the PropertySet opts. The values can be stored either as std::string or as the type of the corresponding MF::props member.

Implements dai::InfAlg.

PropertySet dai::ExactInf::getProperties ( ) const

virtual

Returns parameters of this inference algorithm converted into a PropertySet.

Implements dai::InfAlg.

string dai::ExactInf::printProperties ( ) const

virtual

Returns parameters of this inference algorithm formatted as a string in the format "[key1=val1,key2=val2,...,keyn=valn]".

Implements dai::InfAlg.

Factor dai::ExactInf::calcMarginal ( const VarSet & vs ) const

Calculates marginal probability distribution for variables vs.

Note: The complexity of this calculation is exponential in the number of variables.

void dai::ExactInf::construct ( )

private

Helper function for constructors.

Member Data Documentation

std::vector<Factor> dai::ExactInf::_beliefsV

private

All single variable marginals.

std::vector<Factor> dai::ExactInf::_beliefsF

private

All factor variable marginals.

Real dai::ExactInf::_logZ

private

Logarithm of partition sum.

The documentation for this class was generated from the following files:

include/dai/exactinf.h
src/exactinf.cpp

Classes

Public Member Functions

Public Attributes

Private Member Functions

Private Attributes

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation