Session 7: Functional databases

This seventh session lists sources for annotations of functions in assembled metagenoms:

• Curated families/ontologies

  • Pfam

  • KEGG

  • EggNOG

• Large collections

  • UniProt

  • NCBI

• Specialized databases

  • antibiotics resistance: Resfams, CARD, …

  • specific metabolism: antiSMASH, CAZy, …

  • taxonomic/phylogenetic markers: BUSCO, CheckM, mOTUs, …

  • others: virulence, effectors, toxins, plasmids, phages, CRISPR…

The recording is available on the University of Amsterdam’s media site. You can find the slides here: slides session 7.