meta-omics
Courses:
Welcome to Metagenomics 101 !
Welcome to the Metabarcoding Seminar !
Metagenomics 101 lectures:
Session 1: Overview
Session 2: Raw data & QC
Session 3: Read mapping part 1
Session 4: Taxonomy part 1
Session 5: Assembly
Session 6: Metagenome annotation
Session 7: Functional databases
Session 8: Functional profiles
Session 9: Genome reconstruction
Session 10: Genome-based taxonomy, genome and gene catalogues
Bonus lecture: Metatranscriptomics
Metagenomics 101 practicals:
Session 1: Test run
Session 2: Run preprocessing on toy data
Session 3: Run BWA, inspect and filter the output
Session 4: Run mOTUs2, MetaPhlan3, and kraken2
Session 5: Run assemblies in IMP3
Session 6: Run analysis / annotation in IMP3
Session 7: Take a look at annotations
Session 8: Counting reads and calculating profiles
Session 9: Run binning in IMP3
Metabarcoding seminar:
Metabarcoding seminar - 2024
Metabarcoding online seminar - 2022: Part 1
Metabarcoding online seminar - 2022: Part 2
meta-omics
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Index
Index